A complete list of Bruce Lab Publications can be found on PubMed.

iS-G. Park, E.L. Ostrom, S. Liu, D.J. Marcinek, J.E. Bruce
Journal of Proteome Research 2026

A.A. Bakhtina, M.D. Campbell, B.D. Sibley, A. Keller, M.T. Sweetwyne, J.E. Bruce
Molecular and Cellular Proteomics 2025

Taeyeop Park, Katherine Forbush, Yong Li 1, Oscar Vivas, Kacey J. Rosenthal, Jerome Falcone, Cassandra J. Wong, James E. Bruce, Claudia Moreno, Carmen W. Dessauer, John D. Scott
Journal of Biological Chemistry 2025

Hani N. Sabbah, Nathan N. Alder, Genevieve C. Sparagna, James E. Bruce, Brian L. Stauffer, Luke H. Chao, Robert D.S. Pitceathly, Christoph Maack, David J. Marcinek
Biomedicine & Pharmacotherapy 2025

Andrew Keller, Anna A. Bakhtina, and James E. Bruce
Journal of Proteome Research 2025

Anna A. Bakhtina, Helisa H. Wippel, Juan D. Chavez, and James E. Bruce
Journal of Proteome Research 2024

Luke Botticelli, Anna A. Bakhtina, Nathan K. Kaiser, Andrew Keller, Seth McNutt, James E. Bruce, and Feixia Chu
Curr.Opin.Struct.Biol. 2024

Jared P. Mohr,Arianne Caudal,Rong Tian,and James E. Bruce
Journal of Proteome Research 2023

Andrew Keller, Xiaoting Tang, and James E. Bruce
Journal of Proteome Research 2023

Sung-Gun Park, Jared P. Mohr, Gordon A. Anderson, James E. Bruce
Rapid Communications in Mass Spectrometry 2023

Martin Mathay, Andrew Keller, and James E. Bruce
Analytical Chemistry 2023

Anna A. Bakhtina, Gavin A. Pharaoh, Matthew D. Campbell, Andrew Keller, Rudolph S. Stuppard, David J. Marcinek & James E. Bruce
Nature Aging 2023

David F. Burke, Patrick Bryant, Inigo Barrio-Hernandez, Danish Memon, Gabriele Pozzati, Aditi Shenoy, Wensi Zhu, Alistair S. Dunham, Pascal Albanese, Andrew Keller, Richard A. Scheltema, James E. Bruce, Alexander Leitner, Petras Kundrotas, Pedro Beltrao & Arne Elofsson
Nature Structural & Molecular Biology 2023

Arianne Caudal, Xiaoting Tang, Juan Chavez, Andrew Keller, Jared Mohr, Anna Bakhtina, Outi Villet, Hongye Chen, Bo Zhou, Matthew Walker, Rong Tian, and James E. Bruce
Nature Cardiovascular Research 2022, Available online

Andrew Keller, Anna A. Bakhtina, Juan D. Chavez, and James E. Bruce
Journal of Proteome Research 2022

Tara K. Bartolec, Joshua J. Hamey, Andrew Keller, Juan D. Chavez, James E. Bruce, Marc. R. Wilkins
Molecular and Cellular Proteomics 2022

Bo Zhou, Arianne Caudal, Xiaoting Tang, Juan D. Chavez, Timothy S. McMillen, Andrew D. Keller, Outi Villet, Mingyue Zhao, Yaxin Liu, Julia Ritterhoff, Pei Wang, Stephen C. Kolwicz Jr., Wang Wang, James E. Bruce, and Rong Tian
The Journal of Clinical Investigation 2022

Helisa H. Wippel, Juan D. Chavez, Andrew D. Keller, and James E. Bruce
Analytical Chemistry 2022, Available online

Yasuhiro Oda, Madelyn M. Shapiro, Nathan M. Lewis, Xuefei Zhong, Holly K. Huse, Weizhi Zhong, James E. Bruce, Colin Manoil, and Caroline S. Harwood
Journal of Bacterioloy 2022

Juan D. Chavez, Andrew Keller, Helisa H. Wippel, Jared P. Mohr, and James E. Bruce
Analytical Chemistry 2021, Available online 9 December 2021, https://doi.org/10.1021/acs.analchem.1c02209

Helisa H.Wippel, Juan D.Chavez, Xiaoting Tang, and James E.Bruce
Current Opinion in Chemical Biology 2021, Available online 12 August 2021, https://doi.org/10.1016/j.cbpa.2021.06.011

Juan D. Chavez, Helisa H. Wippel, Xiaoting Tang, Andrew Keller, and James E. Bruce
Chem. Rev. 2021, Publication Date:July 7, 2021, https://doi.org/10.1021/acs.chemrev.1c00223

Helisa H Wippel, Mariana Fioramonte, Juan D Chavez and James E Bruce
Mol. Omics, 2021, Accepted Manuscript Available online 20 May 2021, https://doi.org/10.1039/D1MO00024A

Sung-Gun Park, Jared P.Mohr, Gordon A. Anderson, James E. Bruce
International Journal of Mass Spectrometry Available online 19 March 2021, https://doi.org/10.1016/j.ijms.2021.116578

Xiaoting Tang, Helisa H. Wippel, Juan D. Chavez, James E. Bruce
Protein Science Accepted Feb 12th 2021, Published Feb 16 2021

Matthew A. Walker, Juan Chavez, Outi Villet, Xiaoting Tang, Andrew Keller, James E. Bruce, and Rong Tian.
JCI Insight Accepted Dec 16th 2020, Published Feb 8 2021

Juan D. Chavez Sung‐Gun Park Jared P. Mohr James E. Bruce
Mass Spectrometry Reviews Accepted Oct 16th, Published Dec 8th 2020 https://doi.org/10.1002/mas.21675

Keller, Andrew; Chavez, Juan; Tang, Xiaoting ; Bruce, James
Journal of Proteome Research Accepted Nov 19th, 2020

Juan D. Chavez, Andrew Keller, Jared P. Mohr, and James E. Bruce
Analytical Chemistry Publication Date:September 24, 2020 https://doi.org/10.1021/acs.analchem.0c03128

Omar A Itani, Xuefei Zhong, Xiaoting Tang, Barbara A. Scott, Jun Yi Yan, Stephane Flibotte, Yiting Lim, Andrew C. Hsieh, James E. Bruce, Marc Van Gilst, C. Michael Crowder
Current Biology accepted Sept. 21, 2020

Juan D. Chavez, Xiaoting Tang, Matthew D. Campbell, Gustavo Reyes, Philip A. Kramer, Rudy Stuppard, Andrew Keller, Huiliang Zhang, Peter S. Rabinovitch, David J. Marcinek, and James E. Bruce
PNAS first published June 17, 2020 https://doi.org/10.1073/pnas.2002250117

Ramsey JS, Chin EL, Chavez JD, Saha S, Mischuk D, Mahoney J, Mohr J, Robison, FM, Mitrovic E, Xu Y, Strickler SR, Fernandez N, Zhong X, Polek M, Godfrey KE, Giovannoni JJ, Mueller LA, Slupsky CM, Bruce JE, Heck M.
J Proteome Res. 2020 May 12. doi: 10.1021/acs.jproteome.9b00802. [Epub ahead of print] PubMed PMID:32338516

Zhong X, Wu X, Schweppe DK, Chavez JD, Mathay M, Eng JK, Keller A, Bruce JE.
J Am Soc Mass Spectrom. 2020 Feb 5;31(2):190-195. doi: 10.1021/jasms.9b00021

Sung-Gun Park, Gordon A. Anderson, James E. Bruce
J. Am. Soc. Mass Spectrom. 2020 doi: 10.1021/jasms.9b00144

Elizabeth L Chin, John S. Ramsey, Darya O Mishchuk, Surya Saha, Elizabeth Foster, Juan D. Chavez, Kevin Howe, Xuefei Zhong, MaryLou Polek, Kris E. Godfrey, Lukas Mueller, James E. Bruce, Michelle Heck, Carolyn M Slupsky
J. Proteome Res. 2019 doi: 10.1021/acs.jproteome.9b00616.

Juan D. Chavez, Andrew Keller, Bo Zhou, Rong Tian & James E. Bruce
Cell Reports. Volume 29, Issue 8, P2371-2383.E5, Nov 19, 2019.

Rong Tian , Wilson S. Colucci , Zoltan Arany , Markus M. Bachschmid , Scott W. Ballinger , Sihem Boudina , James E. Bruce , David W. Busija , Sergey Dikalov , Gerald W. Dorn II , Zorina S. Galis , Roberta A. Gottlieb , Daniel P. Kelly , Richard N. Kitsis , Mark J. Kohr , Daniel Levy , E. Douglas Lewandowski , Joseph M. McClung , Daria Mochly-Rosen , Kevin D. O’Brien , Brian O’Rourke , Joon-Young Park , Peipei Ping , Michael N. Sack , Shey-Shing Sheu , Yang Shi , Sruti Shiva , Douglas C. Wallace , Robert G. Weiss , Hilary J. Vernon , Renee Wong , Lisa Schwartz Longacre
Circulation 2019 Sept 30. doi: 10.1161/CIRCULATIONAHA.119.040551

Juan D. Chavez, Jared P. Mohr, Martin Mathay, Xuefei Zhong, Andrew Keller & James E. Bruce
Nat Protoc. 2019 Jul 3. doi: 10.1038/s41596-019-0181-3.

Andrew Keller, Juan D. Chavez, Kevin C. Felt, James E. Bruce
J Proteome Res. 2019 Jul 3. doi: 10.1021/acs.jproteome.9b00189.

Wanping Xu, Kristin Beebe, Juan D. Chavez, Marta Boysen, YinYing Lu, Abbey D. Zuehlke, Dimitra Keramisanou, Jane B. Trepel, Christosomos Prodromou, Matthias P. Mayer, James E. Bruce, Ioannis Gelis & Len Neckers
Nature Communications 10, Article number: 2574 (2019)

Xia Wu, Richard J. Siehnel, Jayanthi Garudathri, Benjamin J. Staudinger, Katherine B. Hisert, Egon A. Ozer, Alan R. Hauser, Jimmy K. Eng, Colin Manoil, Pradeep K. Singh, and James E. Bruce
J. Proteome Res Articles ASAP, Published online May 7, 2019

Claudio Iacobucci, Christine Piotrowski, Ruedi Aebersold, Bruno C. Amaral, Philip C. Andrews, Katja Bernfur, Christoph H. Borchers, Nicholas I. Brodie, James E. Bruce, Yong Cao, Stéphane Chaignepain, Juan D. Chavez, Stéphane Claverol, Jurgen Cox, Trisha N. Davis, Gianluca Degliesposti, Meng-Qiu Dong, Nufar Edinger, Cecilia Emanuelsson, Marina Gay, Michael Götze, Francisco Gomes-Neto, Fabio Cesar Gozzo, Craig B. Gutierrez, Caroline Haupt, Albert J.R. Heck, Frank Herzog, Lan Huang, Michael R. Hoopmann, Nir Kalisman, Oleg Klykov, Zdeněk Kukačka, Fan Liu, Michael J. MacCoss, Karl Mechtler, Ravit Mesika, Robert L. Moritz, Nagarjuna Nagaraj, Victor Nesati, Ana G. C. Neves-Fereira, Robert Ninnis, Petr Novák, Francis J O’Reilly, Matthias Pelzing, Evgeniy V. Petrotchenko, Lolita Piersimoni, Manolo Plasencia, Tara L Pukala, Kasper D. Rand, Juri Rappsilber, Dana Reichman, Carolin Sailer, Chris P. Sarnowski, Richard A. Scheltema, Carla Schmidt, David C. Schriemer, Yi Shi, J. Mark Skehel, Moriya Slavin, Frank Sobott, Victor Solis-Mezarino, Heike Stephanowitz, Florian Stengel, Christian E. Stieger, Esben Trabjerg, Michael J. Trnka, Marta Vilaseca, Rosa Viner, Yufei Xiang, Şule Yılmaz, Alex Zelter, Daniel S. Ziemianowicz, Alexander Leitner, and Andrea Sinz
Anal. Chem., Just Accepted Manuscript,DOI: 10.1021/acs.analchem.9b00658, Published online May 2, 2019

Andrew Keller, Juan D. Chavez, Jimmy K. Eng, Zorian Thornton, and James E. Bruce
J. Proteome Res Articles ASAP, Published online December 6, 2018

Juan D Chavez & James E Bruce
Current Opinion in Chemical Biology 2019,48:8–18, Published online 30 August 2018

Sung-Gun Park, Gordon A. Anderson, James E. Bruce
Journal of The American Society for Mass Spectrometry, July 2018, Volume 29, Issue 7, pp 1394–1402

Andrew Keller, Juan D Chavez, James E Bruce
Bioinformatics, bty720, Published online 20 August 2018

Li Xu, Ryan Gordon, Rebecca Farmer, Abhinandan Pattanayak, Andrew Binkowski, Xiaoke Huang, Michael Avram, Sankar Krishna, Eric Voll, Janet Pavese, Juan Chavez, James Bruce, Andrew Mazar, Antoinette Nibbs, Wayne Anderson, Lin Li, Borko Jovanovic, Sean Pruell, Matias Valsecchi, Giulio Francia, Rick Betori, Karl Scheidt & Raymond Bergan
Nature Communications, volume 9, Article number: 2454 (2018)

Mohr JP, Perumalla P, Chavez JD, Eng JK, Bruce JE.
Anal Chem. 2018 Apr 20. doi:10.1021/acs.analchem.7b04991. PubMed PMID: 29676898.

Vreven T, Schweppe DK, Chavez JD, Weisbrod CR, Shibata S, Zheng C, Bruce JE, Weng Z.
J Mol Biol. 2018 Apr 14. pii: S0022-2836(18)30235-3. doi:10.1016/j.jmb.2018.04.010. PubMed PMID: 29665372.

Park SG, Anderson GA, Bruce JE.
International Journal of Mass Spectrometry Volume 427, April 2018, Pages 29-34 doi: 10.1016/j.ijms.2017.08.020

Chavez JD, Lee CF, Caudal A, Keller A, Tian R, Bruce JE
Cell Syst. 2018 Jan 24;6(1):136-141.e5. doi: 10.1016/j.cels.2017.10.017. PMID: 29199018

Nygren PJ, Mehta S, Schweppe DK, Langeberg LK, Whiting JL, Weisbrod CR, Bruce JE, Zhang J, Veesler D, Scott JD.
Elife. 2017 Oct 2;6. pii: e30872. doi: 10.7554/eLife.30872. PMID: 28967377

Kaufman DM, Wu X, Scott BA, Itani OA, Van Gilst MR, Bruce JE, Michael Crowder C.
Cell Death Differ. 2017 Jun 23. doi: 10.1038/cdd.2017.101. PMID: 28644434

Alexander MM, Mohr JP, DeBlasio SL, Chavez JD, Ziegler-Graff V, Brault V, Bruce JE, Cilia M.
Virus Res. 2017 May 11. pii: S0168-1702(16)30840-1. PMID: 28502641

Park SG, Anderson GA, Bruce JE.
J Am Soc Mass Spectrom. 2017 Mar;28(3):515-524. PMID: 28058592

Hisert KB, Heltshe SL, Pope C, Jorth P, Wu X, Edwards RM, Radey M, Accurso FJ, Wolter DJ, Cooke G, Adam RJ, Carter S, Grogan B, Launspach JL, Donnelly SC, Gallagher C, Bruce JE, Stoltz D, Welsh MJ, Hoffman LR, McKone EF, Singh PK.
Am J Respir Crit Care Med. 2017 Feb 21. PMID: 28222269

Schweppe DK, Chavez JD, Lee CF, Caudal A, Kruse SE, Stuppard R, Marcinek DJ, Shadel GS, Tian R, Bruce JE.
Proc Natl Acad Sci U S A. 2017 Feb 14;114(7):1732-1737. PMID: 28130547

Ramsey JS, Chavez JD, Johnson R, Hosseinzadeh S, Mahoney JE, Mohr JP, Robison F, Zhong X, Hall DG, MacCoss M, Bruce J, Cilia M.
R Soc Open Sci. 2017 Feb 8;4(2):160545. PMID: 28386418

Zhong X, Navare AT, Chavez JD, Eng JK, Schweppe DK, Bruce JE.
J Proteome Res. 2017 Feb 3;16(2):720-727. PMID: 28152603

Chavez JD, Eng JK, Schweppe DK, Cilia M, Rivera K, Zhong X, Wu X, Allen T, Khurgel M, Kumar A, Lampropoulos A, Larsson M, Maity S, Morozov Y, Pathmasiri W, Perez-Neut M, Pineyro-Ruiz C, Polina E, Post S, Rider M, Tokmina-Roszyk D, Tyson K, Vieira Parrine Sant'Ana D, Bruce JE.
PLoS One. 2016 Dec 20;11(12):e0167547 PMID: 27997545

Wu X, Chavez JD, Schweppe DK, Zheng C, Weisbrod CR, Eng JK, Murali A, Lee SA, Ramage E, Gallagher LA, Kulasekara HD, Edrozo ME, Kamischke CN, Brittnacher MJ, Miller SI, Singh PK, Manoil C, Bruce JE.
Nat Commun. 2016 Nov 11;7:13414 PMID: 27834373

Lee CF, Chavez JD, Garcia-Menendez L, Choi Y, Roe ND, Chiao YA, Edgar JS, Goo YA, Goodlett DR, Bruce JE, Tian R.
Circulation. 2016 Sep 20;134(12):883-94 PMID: 27489254

Juan D. Chavez, Devin K. Schweppe, Jimmy K Eng and James E. Bruce
Cell Chemical Biology, Cell Chem Biol. 2016 Jun 23;23(6):716-726 PMID: 27341434

Devin K. Schweppe, Chunxiang Zheng, Juan D. Chavez, Arti T. Navare, Xia Wu, Jimmy K Eng and James E. Bruce
Bioinformatics, Just Accepted Manuscript • doi: 10.1093/bioinformatics/btw232 •published April 29, 2016

Devin K. Schweppe, Juan D. Chavez, Arti T. Navare, Xia Wu, Bianca Ruiz, Jimmy K. Eng, Henry Lam, and James E. Bruce
JPR, Just Accepted Manuscript • 10.1021/acs.jproteome.6b00014 • Publication Date (Web): 18 April 2016

Sung-Gun Park, Gordon A. Anderson, Arti T. Navare, and James E. Bruce
Anal. Chem., Just Accepted Manuscript • DOI: 10.1021/acs.analchem.5b02987 • Publication Date (Web): 15 Dec 2015

Stacy L. DeBlasio, Juan D. Chavez, Mariko M. Alexander, John Ramsey, Jimmy K. Eng, Jaclyn Mahoney, Stewart M. Gray, James E. Bruce, and Michelle Cilia
J. Virol. Accepted manuscript posted online 9 December 2015 , doi:10.1128/JVI.01706-15

Devin K. Schweppe, Christopher Harding, Juan D. Chavez, Xia Wu, Elizabeth Ramage, Pradeep K. Singh, Colin Manoil, James E. Bruce
Chemistry & Biology, DOI: dx.doi.org/10.1016/j.chembiol.2015.09.015. Published Online: November 05, 2015.

Devin K. Schweppe, Juan D. Chavez, and James E. Bruce
Bioinformatics, DOI: 10.1093/bioinformatics/btv519. First published Sept. 26 2015.

Peter Jorth, Benjamin J. Staudinger, Xia Wu, Katherine B. Hisert, Hillary Hayden, Jayanthi Garudathri, Christopher L. Harding, Matthew C. Radey, Amir Rezayat, Gilbert Bautista, William R. Berrington, Amanda F. Goddard, Chunxiang Zheng, Angus Angermeyer, Mitchell J. Brittnacher, Jacob Kitzman, Jay Shendure, Corinne L. Fligner, John Mittler, Moira L. Aitken, Colin Manoil, James E. Bruce, Timothy L. Yahr, Pradeep K. Singh
Cell Host & Microbe(2015), Published Online: August 20, 2015, DOI: http://dx.doi.org/10.1016/j.chom.2015.07.006

Juan D. Chavez, Devin K. Schweppe, Jimmy K. Eng, Chunxiang Zheng, Alex Taipale, Yiyi Zhang, Kohji Takara and James E. Bruce
Nature Communications 6, Article number: 7928 doi:10.1038/ncomms8928. Published August 03, 2015

Xia Wu, Kiara Held, Chunxiang Zheng, Benjamin J. Staudinger, Juan D. Chavez, Chad R. Weisbrod, Jimmy K. Eng, Pradeep K. Singh, Colin Manoil and James E. Bruce
Mol Cell Proteomics mcp.M115.050161. First Published on May 27,2015

Probing the Protein Interaction Network of Pseudomonas aeruginosa Cells by Chemical Cross-Linking Mass Spectrometry.
Arti T. Navare, Juan D. Chavez, Chunxiang Zheng, Chad R. Weisbrod, Jimmy K. Eng, Richard Siehnel, Pradeep K. Singh, Colin Manoil, James E. Bruce
Structure, DOI: http://dx.doi.org/10.1
PMID: 25800553 [PubMed - in process]

Analysis of the Campylobacter jejuni Genome by SMRT DNA Sequencing Identifies Restriction-Modification Motifs.
O'Loughlin JL, Eucker TP, Chavez JD, Samuelson DR, Neal-McKinney J, Gourley CR, Bruce JE, Konkel ME.
PLoS One. 2015 Feb 19;10(2):e0118533. doi: 10.1371/journal.pone.0118533. eCollection 2015.
PMID: 25695747 [PubMed - in process]

Solid-phase N-terminal peptide enrichment study by optimizing trypsin proteolysis on homoarginine-modified proteins by mass spectrometry.
Chowdhury SM, Munske GR, Yang J, Zhukova D, Nguyen H, Bruce JE.
Rapid Commun Mass Spectrom. 2014 Mar 30;28(6):635-44. doi: 10.1002/rcm.6820.
PMID:24519826[PubMed - in process]

Evidence for lysine acetylation in the coat protein of a polerovirus.
Michelle Cilia, Richard Johnson, Michelle Sweeney, Stacy L. DeBlasio, James E. Bruce, Michael J. MacCoss and Stewart M. Gray
J Gen Virol October 2014 vol. 95 no. Pt 10 2321-2327.
PMID: 24939649 [PubMed - indexed for MEDLINE] PMCID: PMC4165934

Role of the tumor suppressor IQGAP2 in metabolic homeostasis: possible link between diabetes and cancer.
B. Vaitheesvaran, K. Hartil, A. Navare, C. Zheng, P. Ó Broin, A. Golden, C. Guha, W. N. Lee, I. J. Kurland, J. E. Bruce
Metabolomics. 2014 Feb 18. Print ISSN 1573-3890. Online ISSN 1573-3882.
DOI: 10.1007/s11306-014-0639-9

Proteomic Basis of Cisplatin Resistance
Juan D. Chavez and James Edward Bruce.
Encyclopedia of Metalloproteins. 2013 pp 1822-1829. DOI: 10.1007/978-1-4614-1533-6_555. Print ISBN: 978-1-4614-1532-9. Online ISBN: 978-1-4614-1533-6. Publisher: Springer New York

Performance evaluation of a dual linear ion trap-Fourier transform ion cyclotron resonance mass spectrometer for proteomics research.
Chad R Weisbrod CR, Hoopmann MR, Senko MW, Bruce JE.
J Proteomics. 2013 Apr 13. pii: S1874-3919(13)00190-5. doi: 10.1016/j.jprot.2013.04.009. [Epub ahead of print]
DOI: 10.1021/pr3011638

In vivo protein interaction network identified with a novel real-time cross-linked peptide identification strategy
Chad R Weisbrod , Juan D. Chavez , Jimmy K. Eng , Li Yang , Chunxiang Zheng , and James Edward Bruce
J. Proteome Res., Just Accepted Manuscript Publication Date (Web): February 17, 2013
DOI: 10.1021/pr3011638

XLink-DB: database and software tools for storing and visualizing protein interaction topology data
Chunxiang Zheng , Chad R Weisbrod , Juan D Chavez , Jimmy K Eng , Vagisha Sharma , Xia Wu , and James Edward Bruce
J. Proteome Res., Just Accepted Manuscript Publication Date (Web): February 17, 2013
DOI: 10.1021/pr301162j

Protein interactions, Posttranslational Modifications and Topologies in Human Cells
Juan D. Chavez,Chad R. Weisbrod, Chunxiang Zheng, Jimmy K. Eng and James E. Bruce*
Mol Cell Proteomics mcp.M112.024497. First Published on January 25,2013
doi:10.1074/mcp.M112.024497

Chemical and Engineering News Article:Cross-Linking Mass Spectrometry Gets Easier
Celia Henry Arnaud
Chemical and Engineering News: Volume 90 Issue 45 | pp. 32-35
Issue Date: November 5, 2012

In vivo protein complex topologies: Sights through a cross-linking lens
James E. Bruce
Proteomics. 2012 May 18. doi: 10.1002/pmic.201100516. [Epub ahead of print]
PMID: 22610688 [PubMed - as supplied by publisher]

Peripheral Effects of FAAH Deficiency on Fuel and Energy Homeostasis: Role of Dysregulated Lysine Acetylation
Bhavapriya Vaitheesvaran, Li Yang, Kirsten Hartil, Sherrye Glaser, Stephen Yazulla, James E. Bruce, Irwin J. Kurland
PLoS ONE 7(3): e33717. doi:10.1371/journal.pone.0033717
Publication Date (Web): March 19, 2012

Cross-linking measurements of the Potato leafroll virus reveal protein interaction topologies required for virion stability, aphid transmission, and virus-plant interactions
Juan D. Chavez, Michelle Cilia, Chad R. Weisbrod, Ho-Jong Ju, Jimmy K. Eng, Stewart M. Gray, and James Edward Bruce
J. Proteome Res., Just Accepted Manuscript
Publication Date (Web): March 6, 2012

Accurate Peptide Fragment Mass Analysis: Multiplexed Peptide Identification and Quantification.
Weisbrod CR, Eng JK, Hoopmann MR, Baker T, Bruce JE.
J Proteome Res. 2012 Jan 31. [Epub ahead of print]
PMID: 22288382 [PubMed - as supplied by publisher]

AKAP2 anchors PKA with aquaporin-0 to support ocular lens transparency.
Gold MG, Reichow SL, O'Neill SE, Weisbrod CR, Langeberg LK, Bruce JE, Gonen T, Scott JD.
EMBO Mol Med. 2012 Jan;4(1):15-26. doi: 10.1002/emmm.201100184. Epub 2011 Nov 16.
PMID:22095752 [PubMed - in process]

In Vivo Application of Photocleavable Protein Interaction Reporter Technology.
Yang L, Zheng C, Weisbrod CR, Tang X, Munske GM, Hoopmann MR, Eng JK, Bruce J.
J Proteome Res. 2011 Dec 15. [Epub ahead of print]
PMID:22168182[PubMed - as supplied by publisher]

SILACtor: software to enable dynamic SILAC studies.
Hoopmann MR, Chavez JD, Bruce JE.
Anal Chem. 2011 Nov 15;83(22):8403-10. Epub 2011 Oct 27.
PMID:21954881[PubMed - as supplied by publisher]]

The Fasted/Fed Mouse Metabolic Acetylome : N6-Acetylation Differences Suggest Acetylation Coordinates Organ-Specific Fuel Switching.
Li Yang , Bhavapriya Vaitheesvaran , Kirsten Hartil , Alan J. Robinson , Michael R. Hoopmann , Jimmy K. Eng , Irwin Jack Kurland , and James Edward Bruce
J Proteome Res. 2011 Sep 2;10(9):4134-49. Epub 2011 Aug 16.
PMID:21728379[PubMed - in process]

Chemical and Engineering News Feature: Meals Modify Proteins
Erika Gebel
Chemical and Engineering News
July 14, 2011

Cross-linking measurements of in vivo protein complex topologies.
Zheng C, Yang L, Hoopmann MR, Eng JK, Tang X, Weisbrod CR, Bruce JE.
Mol Cell Proteomics. 2011 Jun 22. [Epub ahead of print]
PMID:21697552[PubMed - as supplied by publisher]

Quantitative Proteomic and Interaction Network Analysis of Cisplatin Resistance in HeLa Cells.
Chavez JD, Hoopmann MR, Weisbrod CR, Takara K, Bruce JE.
PLoS ONE 2011 6(5): e19892.
PMID:21637840[PubMed - indexed for MEDLINE] Free PMC Article

Architecture and dynamics of an A-kinase anchoring protein 79 (AKAP79) signaling complex.
Gold MG, Stengel F, Nygren PJ, Weisbrod CR, Bruce JE, Robinson CV, Barford D, Scott JD.
Proc Natl Acad Sci U S A. 2011 Apr 19;108(16):6426-31. Epub 2011 Apr 4.
PMID: 21464287 [PubMed - in process]

Quantification of protein-protein interactions with chemical cross-linking and mass spectrometry.
Chavez JD, Liu NL, Bruce JE.
J Proteome Res. 2011 Apr 1;10(4):1528-37. Epub 2011 Feb 18.
PMID: 21222489 [PubMed - in process]

Improved Strategies for Rapid Identification of Chemically Cross-linked Peptides.
Hoopmann MR, Weisbrod CR, Bruce JE.
J Proteome Res. 2010 Dec 3;9(12)6323-33. Epub 2010 Nov 10.
PMID: 20886857 [PubMed - in process]

Excite-coupled trapping ring electrode cell (eTREC): radial trapping field control, linearized excitation, and improved detection.
Weisbrod CR, Kaiser NK, Skulason GE, Bruce JE.
Anal Chem. 2010 Jul 15;82(14):6281-6.
PMID: 20575529 [PubMed - in process]

A new cross-linking strategy: protein interaction reporter (PIR) technology for protein-protein interaction studies.
Tang X, Bruce JE.
Mol Biosyst. 2010 Jun 18;6(6):939-47. Epub 2010 Mar 16.
PMID: 20485738 [PubMed - in process]

A photocleavable and mass spectrometry identifiable cross-linker for protein interaction studies.
Yang L, Tang X, Weisbrod CR, Munske GR, Eng JK, von Haller PD, Kaiser NK, Bruce JE.
Anal Chem. 2010 May 1;82(9):3556-66.
PMID: 20373789 [PubMed - in process]

Optimizing the detergent concentration conditions for immunoprecipitation (IP) coupled with LC-MS/MS identification of interacting proteins.
Yang L, Zhang H, Bruce JE.
Analyst. 2009 Apr;134(4):755-62. Epub 2009 Feb 9.
PMID:19305927[PubMed - indexed for MEDLINE]

Chemical cross-linking for protein-protein interaction studies.
Tang X, Bruce JE.
Methods Mol Biol. 2009;492:283-93.
PMID:19241040[PubMed - indexed for MEDLINE]

A novel Fourier transform ion cyclotron resonance mass spectrometer with improved ion trapping and detection capabilities.
Kaiser NK, Skulason GE, Weisbrod CR, Bruce JE.
J Am Soc Mass Spectrom. 2009 May;20(5):755-62. Epub 2009 Jan 7.
PMID:19200753[PubMed - indexed for MEDLINE] Free PMC Article

Identification of protein-protein interactions and topologies in living cells with chemical cross-linking and mass spectrometry.
Zhang H, Tang X, Munske GR, Tolic N, Anderson GA, Bruce JE.
Mol Cell Proteomics. 2009 Mar;8(3):409-20 Epub 2008 Oct 20.
PMID: 18936057 [PubMed - as supplied by publisher]

Trapping ring electrode cell: a FTICR mass spectrometer cell for improved signal-to-noise and resolving power.
Weisbrod CR, Kaiser NK, Skulason GE, Bruce JE.
Anal Chem. 2008 Sep 1;80(17):6545-53. Epub 2008 Aug 6.
PMID: 18681460 [PubMed - indexed for MEDLINE]

Restrained ion population transfer: a novel ion transfer method for mass spectrometry.
Kaiser NK, Skulason GE, Weisbrod CR, Wu S, Zhang K, Prior DC, Buschbach MA, Anderson GA, Bruce JE.
Rapid Commun Mass Spectrom. 2008 Jun;22(12):1955-64.
PMID: 18489013 [PubMed - indexed for MEDLINE]

In vivo identification of the outer membrane protein OmcA-MtrC interaction network in Shewanella oneidensis MR-1 cells using novel hydrophobic chemical cross-linkers.
Zhang H, Tang X, Munske GR, Zakharova N, Yang L, Zheng C, Wolff MA, Tolic N, Anderson GA, Shi L, Marshall MJ, Fredrickson JK, Bruce JE.
J Proteome Res. 2008 Apr;7(4):1712-20. Epub 2008 Feb 28.
PMID: 18303833 [PubMed - indexed for MEDLINE]

Reduction of axial kinetic energy induced perturbations on observed cyclotron frequency.
Kaiser NK, Weisbrod CR, Webb BN, Bruce JE.
J Am Soc Mass Spectrom. 2008 Apr;19(4):467-78. Epub 2008 Jan 6.
PMID: 18262433 [PubMed - indexed for MEDLINE]

Informatics strategies for large-scale novel cross-linking analysis.
Anderson GA, Tolic N, Tang X, Zheng C, Bruce JE.
J Proteome Res. 2007 Sep;6(9):3412-21. Epub 2007 Aug 3.
PMID: 17676784 [PubMed - indexed for MEDLINE]

Design and performance of an atmospheric pressure ion mobility Fourier transform ion cyclotron resonance mass spectrometer.
Tang X, Bruce JE, Hill HH Jr.
Rapid Commun Mass Spectrom. 2007;21(7):1115-22.
PMID: 17318922 [PubMed - indexed for MEDLINE]

Profiling the membrane proteome of Shewanella oneidensis MR-1 with new affinity labeling probes.
Tang X, Yi W, Munske GR, Adhikari DP, Zakharova NL, Bruce JE.
J Proteome Res. 2007 Feb;6(2):724-34.
PMID: 17269728 [PubMed - indexed for MEDLINE]

Collisionally activated dissociation and electron capture dissociation of several mass spectrometry-identifiable chemical cross-linkers.
Chowdhury SM, Munske GR, Tang X, Bruce JE.
Anal Chem. 2006 Dec 15;78(24):8183-93.
PMID: 17165806 [PubMed - indexed for MEDLINE]

A bifunctional monolithic column for combined protein preconcentration and digestion for high throughput proteomics research.
Zhang K, Wu S, Tang X, Kaiser NK, Bruce JE.
J Chromatogr B Analyt Technol Biomed Life Sci. 2007 Apr 15;849(1-2):223-30. Epub 2006 Dec 5.
PMID: 17150420 [PubMed - indexed for MEDLINE]

Evaluation of low energy CID and ECD fragmentation behavior of mono-oxidized thio-ether bonds in peptides.
Chowdhury SM, Munske GR, Ronald RC, Bruce JE.
J Am Soc Mass Spectrom. 2007 Mar;18(3):493-501. Epub 2006 Nov 27.
PMID: 17126025 [PubMed - indexed for MEDLINE]

Characterizing electrospray ionization using atmospheric pressure ion mobility spectrometry.
Tang X, Bruce JE, Hill HH Jr.
Anal Chem. 2006 Nov 15;78(22):7751-60.
PMID: 17105168 [PubMed - indexed for MEDLINE]

Incorporation of a flared inlet capillary tube on a fourier transform ion cyclotron resonance mass spectrometer.
Wu S, Zhang K, Kaiser NK, Bruce JE, Prior DC, Anderson GA.
J Am Soc Mass Spectrom. 2006 Jun;17(6):772-9. Epub 2006 Apr 17.
PMID: 16603374 [PubMed - indexed for MEDLINE]

Proteomic identification of heat shock protein 90 as a candidate target for p53 mutation reactivation by PRIMA-1 in breast cancer cells.
Rehman A, Chahal MS, Tang X, Bruce JE, Pommier Y, Daoud SS.
Breast Cancer Res. 2005;7(5):R765-74. Epub 2005 Jul 27.
PMID: 16168122 [PubMed - indexed for MEDLINE]

Observation of increased ion cyclotron resonance signal duration through electric field perturbations.
Kaiser NK, Bruce JE.
Anal Chem. 2005 Sep 15;77(18):5973-81.
PMID: 16159130 [PubMed - indexed for MEDLINE]

Increased protein identification capabilities through novel tandem MS calibration strategies.
Wu S, Kaiser NK, Meng D, Anderson GA, Zhang K, Bruce JE.
J Proteome Res. 2005 Jul-Aug;4(4):1434-41.
PMID: 16083297 [PubMed - indexed for MEDLINE]

A hybrid LC-Gel-MS method for proteomics research and its application to protease functional pathway mapping.
Wu S, Tang XT, Siems WF, Bruce JE.
J Chromatogr B Analyt Technol Biomed Life Sci. 2005 Aug 5;822(1-2):98-111.
PMID: 15994140 [PubMed - indexed for MEDLINE]

Novel mutations introduced at the beta-site of amyloid beta protein precursor enhance the production of amyloid beta peptide by BACE1 in vitro and in cells.
Shi XP, Tugusheva K, Bruce JE, Lucka A, Chen-Dodson E, Hu B, Wu GX, Price E, Register RB, Lineberger J, Miller R, Tang MJ, Espeseth A, Kahana J, Wolfe A, Crouthamel MC, Sankaranarayanan S, Simon A, Chen L, Lai MT, Pietrak B, DiMuzio J, Li Y, Xu M, Huang Q, Garsky V, Sardana MK, Hazuda DJ.
J Alzheimers Dis. 2005 Apr;7(2):139-48; discussion 173-80.
PMID: 15851852 [PubMed - indexed for MEDLINE]

Improved mass accuracy for tandem mass spectrometry.
Kaiser NK, Anderson GA, Bruce JE.
J Am Soc Mass Spectrom. 2005 Apr;16(4):463-70.
PMID: 15792715 [PubMed - indexed for MEDLINE]

Tang X, Munske GR, Siems WF, Bruce JE.
Anal Chem. 2005 Jan 1;77(1):311-8. PubMed PMID: 15623310.

Breast Cancer Res. 2005;7(5):R765-74. Epub 2005 Jul 27. PubMed PMID: 16168122; PubMed Central PMCID:PMC1242148.

A new maleimide-bound acid-cleavable solid-support reagent for profiling phosphorylation.
Chowdhury SM, Munske GR, Siems WF, Bruce JE.
Rapid Commun Mass Spectrom. 2005;19(7):899-909.
PMID: 15739244 [PubMed - indexed for MEDLINE]